flotilla.data_model.metadata module¶

class flotilla.data_model.metadata.MetaData(data, phenotype_order=None, phenotype_to_color=None, phenotype_to_marker=None, phenotype_col='phenotype', pooled_col='pooled', predictor_config_manager=None)[source]¶

Bases: flotilla.data_model.base.BaseData

merge_boolean_columns(columns)[source]¶

Merge boolean columns in data and return logical OR

Parameters:	columns : list-like Boolean columns whose attributes to merge
Returns:	merged : pandas.Series A single boolean column, with True for each row that had True in any column

n_phenotypes[source]¶

phenotype_color_order[source]¶

phenotype_order[source]¶

phenotype_transitions[source]¶

sample_id_to_color[source]¶

sample_id_to_phenotype[source]¶

sample_subsets[source]¶

set_outliers_by_merging_columns(columns)[source]¶

Merge boolean columns of data into “outlier” column

Parameters:	columns : list-like Column names whose boolean attributes to merge
Returns:	is_ever_an_outlier : pandas.Series Boolean series indicating whether this sample was ever indicated as an outlier

unique_phenotypes[source]¶