flotilla.go module¶

interface with external data sources i.e. GO files, web

class flotilla.go.GO(GOFile)[source]¶

Bases: object

gene ontology tool

>>> go = hg19GO()
>>> go.geneXref['ENSG00000100320']
'RBFOX2'
>>> data = go.enrichment(list, background)

enrichment(geneList, background=None, **kwargs)[source]¶

geneNames(x)[source]¶

link_to_geneNames(list_link)[source]¶

flotilla.go.GO_enrichment(geneList, ontology, expressedGenes=None, printIt=False, pCut=1000000, xRef={})[source]¶

flotilla.go.generateOntology(df)[source]¶