Flotilla
0.2.2
Tutorial
Gallery
YeoLab@UCSD
Site
flotilla
flotilla package
What’s new in the package
v0.2.1 (November 6th, 2014)
v0.2.0 (November 5th, 2014)
OS X Installation instructions
Docker Instructions
API Reference
General use plots
Interactive plots
Machine learning plots
Splicing-specific plots
Create your very own datapackage!
Flotilla tutorial
Install flotilla
Create a datapackage
Plotting functions
Recreated papers
Page
flotilla.Study.interactive_graph
Source
flotilla.Study.interactive_graph
¶
Study.
interactive_graph
(
data_types=('expression'
,
'splicing')
,
sample_subsets=None
,
feature_subsets=None
,
featurewise=False
,
cov_std_cut=(0.1
,
3)
,
degree_cut=(0
,
10)
,
n_pcs=(2
,
100)
,
draw_labels=False
,
feature_of_interest='RBFOX2'
,
weight_fun=None
,
use_pc_1=True
,
use_pc_2=True
,
use_pc_3=True
,
use_pc_4=True
,
savefile=''
)
¶
Olga B. Botvinnik
is funded by the
NDSEG
fellowship and is a
NumFOCUS
John Hunter Technology Fellow
.
Michael T. Lovci was partially funded by a fellowship from
Genentech
. Partially funded by
NIH
grants NS075449 and HG004659 and
CIRM
grants RB4-06045 and TR3-05676 to
Gene Yeo
.