Plot expression of a gene in all phenotypesΒΆ

In each column of the phenotype, the pooled samples are plotted as black dots and the outliers are plotted as grey shadows.

../_images/plot_gene.png

Python source code: [download source: plot_gene.py]

import flotilla
study = flotilla.embark(flotilla._shalek2013)
study.plot_gene('IRF7')
Olga B. Botvinnik is funded by the NDSEG fellowship and is a NumFOCUS John Hunter Technology Fellow.
Michael T. Lovci was partially funded by a fellowship from Genentech.
Partially funded by NIH grants NS075449 and HG004659 and CIRM grants RB4-06045 and TR3-05676 to Gene Yeo.