flotilla.data_model.expression module¶

Data types related to gene expression, e.g. from RNA-Seq or microarrays. Included SpikeIn data.

class flotilla.data_model.expression.ExpressionData(data, feature_data=None, thresh=-inf, feature_rename_col=None, feature_ignore_subset_cols=None, outliers=None, log_base=None, pooled=None, plus_one=False, minimum_samples=0, technical_outliers=None, predictor_config_manager=None)[source]¶

Bases: flotilla.data_model.base.BaseData

Object for holding and operating on expression data

binify(*args, **kwargs)[source]¶

class flotilla.data_model.expression.SpikeInData(data, feature_data=None, predictor_config_manager=None, technical_outliers=None)[source]¶

Bases: flotilla.data_model.expression.ExpressionData

Class for Spikein data and associated functions Attributes ———-

Constructor for

Parameters:	data, experiment_design_data