Visualize results from :py:mod:flotilla.compute.network
Bases: flotilla.compute.network.Networker
Draw the graph of similarities between samples or features
Parameters: | feature_ids : list of str, or None
sample_ids : list of str, or None
x_pc : str, optional
y_pc :
n_pcs : int
cov_std_cut : float
use_pc{1-4} : bool
degree_cut : int
weight_function : [‘arctan’ | ‘sq’ | ‘abs’ | ‘arctan_sq’]
gene_of_interest : str
|
---|---|
Returns: | graph : networkx.Graph positions : (x,y) positions of nodes |
Parameters: | feature_ids : list of str, or None
sample_ids : list of str, or None
x_pc : str
y_pc :
n_pcs : int???
cov_std_cut : float??
use_pc{1-4} use these pcs in cov calculation (default True) degree_cut : int??
weight_function : [‘arctan’ | ‘sq’ | ‘abs’ | ‘arctan_sq’]
gene_of_interest : str
|
---|---|
Returns: | #TODO: Mike please fill these in graph : networkx.Graph
positions : ???
|