flotilla.Study.plot_classifier

Study.plot_classifier(trait, sample_subset=None, feature_subset='all_genes', data_type='expression', title='', show_point_labels=False, **kwargs)

Plot a predictor for the specified data type and trait(s)

Parameters:

data_type : str

One of the names of the data types, e.g. “expression” or “splicing”

trait : str

Column name in the metadata data that you would like to classify on

Olga B. Botvinnik is funded by the NDSEG fellowship and is a NumFOCUS John Hunter Technology Fellow.
Michael T. Lovci was partially funded by a fellowship from Genentech.
Partially funded by NIH grants NS075449 and HG004659 and CIRM grants RB4-06045 and TR3-05676 to Gene Yeo.