flotilla.Study.plot_graph

Study.plot_graph(data_type='expression', sample_subset=None, feature_subset=None, featurewise=False, **kwargs)

Plot the graph (network) of these data

Parameters:

data_type : str

One of the names of the data types, e.g. “expression” or “splicing”

sample_subset : str or None

Which subset of the samples to use, based on some phenotype column in the experiment design data. If None, all samples are used.

feature_subset : str or None

Which subset of the features to used, based on some feature type in the expression data (e.g. “variant”). If None, all features are used.

Olga B. Botvinnik is funded by the NDSEG fellowship and is a NumFOCUS John Hunter Technology Fellow.
Michael T. Lovci was partially funded by a fellowship from Genentech.
Partially funded by NIH grants NS075449 and HG004659 and CIRM grants RB4-06045 and TR3-05676 to Gene Yeo.