outrigger.tests.conftest module

outrigger.tests.conftest.bam_filenames(tasic2016_bam)

outrigger.tests.conftest.data_folder()

Absolute path to where test data is stored

outrigger.tests.conftest.db(db_filename)

outrigger.tests.conftest.db_filename(gtf_filename)

outrigger.tests.conftest.gtf_filename(tasic2016_gtf)

outrigger.tests.conftest.ignore_multimapping(request)

outrigger.tests.conftest.junction_metadata(tasic2016_outrigger_junctions)

outrigger.tests.conftest.junction_reads(tasic2016_outrigger_junctions)

outrigger.tests.conftest.myl6_novel_exon_junction()

Junction downstream of a novel exon in MYL6 test set

outrigger.tests.conftest.n_jobs(request)

outrigger.tests.conftest.negative_control_folder(data_folder)

outrigger.tests.conftest.negative_control_output(negative_control_folder)

outrigger.tests.conftest.outrigger_folder()

Absolute path root folder of outrigger package

outrigger.tests.conftest.simulated(data_folder)

Suffix for simulated data

outrigger.tests.conftest.simulated_outrigger_index(simulated_outrigger_output)

Suffix for simulated data splicing events

outrigger.tests.conftest.simulated_outrigger_mxe(simulated_outrigger_index)

Suffix for simulated data splicing events

outrigger.tests.conftest.simulated_outrigger_output(simulated)

Suffix for simulated data outrigger output

outrigger.tests.conftest.simulated_outrigger_psi(simulated_outrigger_output)

Suffix for simulated data splicing events

outrigger.tests.conftest.simulated_outrigger_se(simulated_outrigger_index)

Suffix for simulated data splicing events

outrigger.tests.conftest.simulated_unprocessed(simulated)

Suffix for raw simulated data

outrigger.tests.conftest.sj_filenames(tasic2016_sj_out_tab)

outrigger.tests.conftest.snap25_exon_id()

Exon1 of MXE event in SNAP25. Should be in the gffutils db

outrigger.tests.conftest.splice_type(request)

outrigger.tests.conftest.strand(request)

outrigger.tests.conftest.tasic2016(data_folder)

Suffix for data created from Tasic et al, Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_bam(tasic2016_unprocessed)

outrigger.tests.conftest.tasic2016_gtf(tasic2016_unprocessed)

outrigger.tests.conftest.tasic2016_intermediate(tasic2016)

Suffix for intermediate files from Tasic et al Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_intermediate_bam(tasic2016_intermediate)

Suffix for intermediate files from Tasic et al Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_intermediate_psi(tasic2016_intermediate)

Suffix for intermediate files from Tasic et al Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_outrigger_junctions(tasic2016_outrigger_output)

outrigger.tests.conftest.tasic2016_outrigger_output(tasic2016)

Suffix for outrigger_output files from Tasic Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_outrigger_output_bam(tasic2016)

Suffix for outrigger_output files from Tasic Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_outrigger_output_index(tasic2016_outrigger_output)

Suffix for outrigger_output files from Tasic Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_outrigger_output_psi(tasic2016_outrigger_output)

Suffix for outrigger_output files from Tasic Nat Neurosci (2016)

outrigger.tests.conftest.tasic2016_sj_out_tab(tasic2016_unprocessed)

outrigger.tests.conftest.tasic2016_unprocessed(tasic2016)

Suffix for raw data created from Tasic et al, Nat Neurosci (2016)