outrigger.tests.validate.test_check_splice_sites module¶

outrigger.tests.validate.test_check_splice_sites.direction(request)[source]¶

outrigger.tests.validate.test_check_splice_sites.do_not_have_mysql()[source]¶: Checks if mysql exists on this platform

outrigger.tests.validate.test_check_splice_sites.exon2_bed(negative_control_folder)[source]¶

outrigger.tests.validate.test_check_splice_sites.genome_name()[source]¶

outrigger.tests.validate.test_check_splice_sites.maybe_chromsizes(request, simulated_chromsizes, genome_name)[source]¶

outrigger.tests.validate.test_check_splice_sites.simulated_chromsizes(negative_control_folder)[source]¶

outrigger.tests.validate.test_check_splice_sites.simulated_fasta(negative_control_folder)[source]¶

outrigger.tests.validate.test_check_splice_sites.test_maybe_read_chromsizes(maybe_chromsizes, genome_name)[source]¶

outrigger.tests.validate.test_check_splice_sites.test_read_splice_sites(exon2_bed, direction, simulated_fasta, simulated_chromsizes, negative_control_folder)[source]¶

outrigger.tests.validate.test_check_splice_sites.test_splice_site_str_to_tuple()[source]¶