outrigger.validate.check_splice_sites module¶
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outrigger.validate.check_splice_sites.read_splice_sites(bed, genome, fasta, direction='upstream')[source]¶ Read splice sites of an exon
Parameters: bed : pybedtools.BedTool | str
Exons whose splice sites you’re interested in
genome : str
Location of a chromosome sizes file for the genome
fasta : str
Location of the genome fasta file
direction : ‘upstream’ | ‘downstream’
Which direction of splice sites you want for the exon
